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( A ) Confocal <t>microscopy</t> images depicting regions of interest (ROI, white boxes) highlighting Upf2 + /GFAP + astrocytes in hippocampus and cortex. ( B ) UPF2 protein is reduced in cKO mice (CTX: CTRL: 100 ± 6, cKO: 67 ± 2, p < 0.0001, Unpaired t -test; HPC: CTRL: 100 ± 5, cKO: 75 ± 1, p = 0.0003, Mann-Whitney test. n = 4 mice per genotype, 20 ROIs per group. Data is presented as mean ± S.E.M. *** denotes p < 0.005, **** denotes p < 0.001. This figure confirms the downregulation of UPF2 protein levels in hippocampus and visual cortex of cKO mice.
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( A ) Confocal <t>microscopy</t> images depicting regions of interest (ROI, white boxes) highlighting Upf2 + /GFAP + astrocytes in hippocampus and cortex. ( B ) UPF2 protein is reduced in cKO mice (CTX: CTRL: 100 ± 6, cKO: 67 ± 2, p < 0.0001, Unpaired t -test; HPC: CTRL: 100 ± 5, cKO: 75 ± 1, p = 0.0003, Mann-Whitney test. n = 4 mice per genotype, 20 ROIs per group. Data is presented as mean ± S.E.M. *** denotes p < 0.005, **** denotes p < 0.001. This figure confirms the downregulation of UPF2 protein levels in hippocampus and visual cortex of cKO mice.
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(A) The platemap showing replicates of ten different doses of staurosporine, an apoptosis-inducing compound. We imaged each well at four fields of view (FOVs) at three z slices, each 3um apart. Images were acquired every 30 minutes for 360 minutes (six hours), capturing Hoechst, ChromaLIVE 488_yellow, ChromaLIVE 488_red, and ChromaLIVE 561. We fixed cells at six hours and stained for AnnexinV, an apoptotic marker, and Hoechst. (B) Our HCLTI pipeline for <t>processing</t> <t>time-lapse</t> <t>microscopy</t> images. (C) Representative images of tracked HeLa single cells across time for varying doses of staurosporine. Cyan represents nuclei, yellow represents ChromaLive 561, and Magenta represents ChromaLive 488 at both its emission channels for visualization purposes only. Scale bars = 10 um.
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( A ) Confocal microscopy images depicting regions of interest (ROI, white boxes) highlighting Upf2 + /GFAP + astrocytes in hippocampus and cortex. ( B ) UPF2 protein is reduced in cKO mice (CTX: CTRL: 100 ± 6, cKO: 67 ± 2, p < 0.0001, Unpaired t -test; HPC: CTRL: 100 ± 5, cKO: 75 ± 1, p = 0.0003, Mann-Whitney test. n = 4 mice per genotype, 20 ROIs per group. Data is presented as mean ± S.E.M. *** denotes p < 0.005, **** denotes p < 0.001. This figure confirms the downregulation of UPF2 protein levels in hippocampus and visual cortex of cKO mice.

Journal: bioRxiv

Article Title: Astrocytic RNA degradation suppresses calcium signaling to support synapse function and restrain anxiety

doi: 10.1101/2025.11.18.689044

Figure Lengend Snippet: ( A ) Confocal microscopy images depicting regions of interest (ROI, white boxes) highlighting Upf2 + /GFAP + astrocytes in hippocampus and cortex. ( B ) UPF2 protein is reduced in cKO mice (CTX: CTRL: 100 ± 6, cKO: 67 ± 2, p < 0.0001, Unpaired t -test; HPC: CTRL: 100 ± 5, cKO: 75 ± 1, p = 0.0003, Mann-Whitney test. n = 4 mice per genotype, 20 ROIs per group. Data is presented as mean ± S.E.M. *** denotes p < 0.005, **** denotes p < 0.001. This figure confirms the downregulation of UPF2 protein levels in hippocampus and visual cortex of cKO mice.

Article Snippet: Spinning disk confocal microscopy followed by Imaris 3D reconstructions facilitated the quantification of PSD-95 + excitatory synapses as well as engulfment of synaptic material ( ).

Techniques: Confocal Microscopy, MANN-WHITNEY

(A) The platemap showing replicates of ten different doses of staurosporine, an apoptosis-inducing compound. We imaged each well at four fields of view (FOVs) at three z slices, each 3um apart. Images were acquired every 30 minutes for 360 minutes (six hours), capturing Hoechst, ChromaLIVE 488_yellow, ChromaLIVE 488_red, and ChromaLIVE 561. We fixed cells at six hours and stained for AnnexinV, an apoptotic marker, and Hoechst. (B) Our HCLTI pipeline for processing time-lapse microscopy images. (C) Representative images of tracked HeLa single cells across time for varying doses of staurosporine. Cyan represents nuclei, yellow represents ChromaLive 561, and Magenta represents ChromaLive 488 at both its emission channels for visualization purposes only. Scale bars = 10 um.

Journal: bioRxiv

Article Title: High-content live-cell time-lapse imaging predicts cells about to die via apoptosis

doi: 10.1101/2025.10.23.684203

Figure Lengend Snippet: (A) The platemap showing replicates of ten different doses of staurosporine, an apoptosis-inducing compound. We imaged each well at four fields of view (FOVs) at three z slices, each 3um apart. Images were acquired every 30 minutes for 360 minutes (six hours), capturing Hoechst, ChromaLIVE 488_yellow, ChromaLIVE 488_red, and ChromaLIVE 561. We fixed cells at six hours and stained for AnnexinV, an apoptotic marker, and Hoechst. (B) Our HCLTI pipeline for processing time-lapse microscopy images. (C) Representative images of tracked HeLa single cells across time for varying doses of staurosporine. Cyan represents nuclei, yellow represents ChromaLive 561, and Magenta represents ChromaLive 488 at both its emission channels for visualization purposes only. Scale bars = 10 um.

Article Snippet: – We then applied the Live Cell Painting assay (ChromaLIVE TM ) , and performed live-cell time-lapse spinning disk confocal microscopy (Yokogawa CQ1), acquiring images per field of view (FOV) every 30 minutes in three z stacks for six hours.

Techniques: Staining, Marker, Time-lapse Microscopy

Journal: bioRxiv

Article Title: High-content live-cell time-lapse imaging predicts cells about to die via apoptosis

doi: 10.1101/2025.10.23.684203

Figure Lengend Snippet:

Article Snippet: – We then applied the Live Cell Painting assay (ChromaLIVE TM ) , and performed live-cell time-lapse spinning disk confocal microscopy (Yokogawa CQ1), acquiring images per field of view (FOV) every 30 minutes in three z stacks for six hours.

Techniques: Imaging, Staining